Advanced Genetics

Harlequin and Merle Interaction in Great Danes

By Dr. Patricia Wells|1180 words|6 min read

Great Danes present a unique complexity in colour genetics due to the interaction between two distinct genes: the merle gene (PMEL17) and the harlequin gene (PSMB7). Understanding how these genes work together - and the additional risks they create, including allele instability - is essential for anyone breeding Danes in the harlequin, merle, or mantle colour families.

The stunning harlequin pattern - white with irregular black patches - has made Great Danes one of the most recognisable breeds. However, producing this pattern safely requires navigating genetic waters that are more complex than in other merle-affected breeds.

Dog undergoing a health evaluation

The Harlequin Gene

The harlequin gene (H) is separate from the merle gene and is unique to Great Danes. It modifies how merle is expressed, turning the typical grey merle areas to white while leaving the dark patches intact. Critically, the harlequin gene is only visible when a dog also carries at least one copy of merle.

Key genetic facts about harlequin:

Veterinarian examining a dog
  • Harlequin (H) is a dominant modifier gene
  • Homozygous harlequin (HH) is embryonic lethal - these puppies do not develop
  • All living harlequin dogs are heterozygous (Hh)
  • Harlequin only expresses visually when merle is also present
  • A dog can carry harlequin without showing it if they lack the merle gene

The Phenotype Combinations

The interaction between harlequin and merle creates several distinct phenotypes that breeders must understand:

Harlequin (Hh + Mm)

The classic pattern: white base with irregular black patches. This requires both one harlequin gene and one merle gene. These dogs are heterozygous for both genes.

Merle (hh + Mm)

Grey with black patches, the standard merle pattern. In Dane terminology, this is sometimes called "blue" in the mantle/harlequin colour family. These dogs carry merle but not harlequin.

Merlequin (Hh + MM)

A double merle that also carries harlequin. These dogs appear mostly white with some pale grey or washed-out patches. They carry all the health risks of double merles and should never be intentionally produced.

Mantle (hh + mm)

Black with white markings in a specific pattern. These dogs carry neither merle nor harlequin and are valuable in harlequin breeding programmes as safe breeding partners.

Harlequin carrier (Hh + mm)

A dog carrying harlequin but not merle will appear as a mantle. The harlequin gene is hidden because there is no merle for it to modify. These "cryptic harlequins" are important to identify through testing.

!!!Double Complexity

Great Dane breeders must test for both merle and harlequin status. A visual mantle could be mm/hh (safe to breed to anything), mm/Hh (carrying hidden harlequin), Mc/hh (cryptic merle), or even Mc/Hh (carrying both hidden genes). Only DNA testing reveals the truth.

Safe Breeding Combinations

The complexity of harlequin/merle interaction creates specific constraints on safe breeding:

Producing Harlequin Puppies Safely

The safest way to produce harlequin puppies is:

  • Harlequin (Hh/Mm) x Mantle (hh/mm) - This produces approximately 25% harlequin, 25% merle, 50% mantle (some carrying H). No double merle risk.
  • Merle (hh/Mm) x Mantle carrying harlequin (hh/Hh) - This can also produce harlequins without double merle risk, though percentages vary.

Dangerous Combinations

The following combinations risk producing double merles:

  • Harlequin x Harlequin - Both parents carry merle, creating 25% double merle risk plus embryonic lethal HH combinations
  • Harlequin x Merle - Both parents carry merle, 25% double merle risk
  • Merle x Merle - Standard double merle risk

Expected outcomes: Harlequin (Hh/Mm) x Mantle (hh/mm)

GenotypePhenotypePercentage
Hh/MmHarlequin~25%
Hh/mmMantle (carries H)~25%
hh/MmMerle~25%
hh/mmMantle~25%

Note: No double merles, no embryonic lethal HH

The Embryonic Lethal Factor

The homozygous harlequin genotype (HH) is incompatible with life. Embryos with this genotype fail to develop and are reabsorbed early in pregnancy. This is why:

  • Harlequin x Harlequin litters are smaller than expected
  • All living harlequin dogs are heterozygous (Hh)
  • Breeding two harlequins together wastes approximately 25% of potential puppies

This embryonic lethal effect, combined with the double merle risk, makes Harlequin x Harlequin breeding particularly inadvisable. The combination of lost embryos and potentially disabled puppies represents a significant welfare concern.

Testing Requirements for Dane Breeders

Great Dane breeders working in harlequin colour families should test all breeding stock for:

  1. Merle status - Including specific allele identification as with other breeds
  2. Harlequin status - To identify carriers that appear as mantles
  3. Colour dilution - Relevant for the blue and fawn colour families

Several genetic testing laboratories offer Great Dane-specific panels that include both merle and harlequin testing. This comprehensive approach is essential for informed breeding decisions.

OKThe Mantle Advantage

Well-bred mantles are the backbone of safe harlequin breeding programmes. A mantle confirmed as mm/hh can be safely bred to any harlequin or merle. Mantles that carry harlequin (mm/Hh) provide additional flexibility for producing harlequin puppies when bred to merles. Investing in quality, tested mantles is the foundation of responsible Dane breeding.

Breed Club Guidance

The Great Dane Club and its international equivalents have developed colour breeding guidelines that address these complexities. These guidelines typically recommend:

  • Breeding harlequins only to mantles or mantle-bred dogs
  • Avoiding harlequin x harlequin or harlequin x merle pairings
  • Testing all breeding stock before making pairing decisions
  • Keeping detailed colour breeding records across generations

New Dane breeders should familiarise themselves with these guidelines and connect with experienced mentors in harlequin breeding. The additional complexity compared to other merle breeds means that learning from established programmes is particularly valuable.

Conclusion

Harlequin Great Danes are magnificent animals, and the pattern can be produced safely through careful breeding practices. The key principles remain the same as for all merle breeding: test everything, breed merle carriers only to confirmed non-merles, and document every pairing. The additional complexity of the harlequin gene simply requires additional testing and more careful planning.

The breed's welfare depends on breeders taking these extra steps. Every double merle Dane, every merlequin, represents a failure to apply available knowledge. With proper testing and adherence to ethical breeding principles, the harlequin pattern can be preserved for future generations without creating the suffering that careless breeding produces.

About the Author

Dr. Patricia Wells

Canine Coat Genetics Specialist

Veterinary geneticist with over 25 years researching coat colour inheritance in domestic canids. Former research fellow at the Animal Health Trust and consultant to multiple breed health programmes across Europe and North America.

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Editor: Doverbeck Canine Genetics Ltd
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About the Author

Dr. Patricia Wells

DVM, PhD Molecular Genetics
Veterinary Geneticist
25+ years research experience

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